FastQCFastQC Report
Fri 3 Feb 2023
EGAF00006173818

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006173818
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4172410
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTGTGTTCACGGCACAGAGGTAGGTGGCTGAATCACTGGGCTGGGAGT283190.6787204517293363No Hit
GCCTTCTCCTTGTTCATCAGAGACTCACAGCCCAGTGATTCAGCCACCTA169660.4066235101536043No Hit
TGTCTAGACTGCAAGTGTCTGGGGAGCATTGTGCGCTCATTGCACAGAGG111130.2663448702308738No Hit
GTTGTTGTTGTATTCTTCCGATACTTACCTGTGACAACAAGTGTTGTTCC72600.17400015818196196No Hit
CATCTTGAAAACAGATGTTCTTCAACTGTAATATAAATCAGGTTATTTCA43870.10514307079122137No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)