FastQCFastQC Report
Fri 3 Feb 2023
EGAF00006173819

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006173819
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4172410
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAGTAGCCAGTATGTTTCTCTGCTCATCAGAGACTCCCAGCCCAGTGAT292550.7011535299742835No Hit
CTGTAGACTGCAAGTGTCTGGGGAGCACTGTGCGCTCATTGCACAGAGGT173520.41587475823325126No Hit
TCACTGATAAATCCAGCAAGTATATCTCCTTGTTCATCAGAGACTCACAG113280.2714977674773093No Hit
TGACTAAATCTAATTGAACGTGACTCTGGGGTCTATTACTGTGCCACCGA74170.17776297152005677No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)