FastQCFastQC Report
Fri 3 Feb 2023
EGAF00006173831

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006173831
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4068057
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTCTCAATGGTGACAAAGAAGATGGAAGGTTTACAGCACAGCTCAATAA355370.8735619977792838No Hit
TGTCTTCCCCCTGCAGTCCCTGTCACTGTGTCACTCAGAGCACAGAAGTA238970.5874303137837056No Hit
CTTCTCTGAGTTGATAATGTCCATATACTCCAATGGTGACAAAGAAGATG227730.5598004157758851No Hit
CGGTATATTTTTTCAAATATGGACATGAAACAAGACCAAAGACTCACTGT226150.5559164977285225No Hit
TCACTCTCAAACTCTCACTTCAATCCTTACCATCAAGTCCGTAGAGAAAG202190.49701860126345326No Hit
GATCTTACAGCTATTTGTACATCAAAGGATCCCAGCCTGAAGACTCAGCC200490.4928397020985694No Hit
GGGTAGGTCTGGCTGGTGCTGGTGGATGCCAGGATTGGGGAAATGCTCAA114360.2811170049977176No Hit
GTCTTGTTCACGGCACAGAGGTAGGTGGCTGAATCACTGGGCTGGGAGTC40920.1005885610747342No Hit
CCTGTTTCACGGCACAGAGGTAGGTGGCTGAATCACTGGGCTGGGAGTCT40690.10002318059948521No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)