FastQCFastQC Report
Fri 3 Feb 2023
EGAF00006173838

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006173838
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3275700
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTCTGGAATCTCTGTTTGTGTTGCTATCAAATGGAGCAGTGAAGCAGG182020.5556674909179717No Hit
CTTCTCCTTATGATTTCCTATGCCTGTCTTTACTTTAATCTGTTAATCCT156060.47641725432731935No Hit
GACTAAATACAGGCATAGGAAATCACAAGGGTATTGATTGGGGAAGTGAT119070.36349482553347373No Hit
GTCTATATACATCCTTCTCGGCTGACAGGATTAAGAGATTAAAGCAAAGA100780.30765943157187775No Hit
CTACTTGTGAAGATTTCATAGACATTTATCACTTCCCCAATCAATACTCT73080.22309735323747595No Hit
CGGTATTAAAGTAAAGACAGGCATAGGAAATCACAAGGGTACTGATTGGG69580.21241261409775009No Hit
ACAGTCATTCATCCTCAGCTTAGGAAGATGATGGGATTAAGAGATTAAAG40820.12461458619531703No Hit
AGGTAGAGTTTGTTTCATATCACAGCCTCCCAGCCTGCAGACTCAGCTAC35070.10706108618005311No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)