FastQCFastQC Report
Fri 3 Feb 2023
EGAF00006173839

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006173839
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3275700
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAGTGTCAGGGGAGCACTGTGTGTCCACGGCACAGAAGTAGGTGGCAGA173780.5305125622004457No Hit
TCTCTGACATACATCCTCCTTGGTTTACGAGCTGACAGGATTAACAGATT158620.484232377812376No Hit
TCTCTATAAATTGTGAAGATTTCATAGACACTTATCACTTCCCCAATCAA125870.3842537472906554No Hit
TCCTTTATTAGTTCCCCAAATTAATACTTTTGTAATTTCTTATGCCTGTC99040.3023475898281283No Hit
ACTGTGACATACATCCTCAGTTTATGAAGATGACGGGATTAAGAGATTAA73460.22425741062978904No Hit
CCCTGATTTCATGGACACTTATCACTTCCCCAATCAGTACCCTTGTGATT70530.21531275757853283No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG53180.16234697927160607No Hit
CCGTTTATAATTTCTTACGCCTGTCTTTACCGCAATCTCTGAACATAAAT41970.1281252861983698No Hit
CCTGTCCAGAGAGGACAATTAGTAAACCACAAAAACTCACGGGGTGTGAC33910.10351985835088684No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)