FastQCFastQC Report
Wed 8 Feb 2023
EGAF00006173866

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006173866
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2274782
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGTATCAATCACTTTACATTTTCTCAGGTTCCTCTTTAGTAAAATAAG152240.6692509436069038No Hit
TTTGTACACACATGCTCTACAACAATTTGTACAGTTAACGCAATCATCAC46780.20564607949245245No Hit
GTCTCGGGACCCCAAACAGAGGGACCGGCTGAAGCCATGACAGAAGAACG35130.15443238077319058No Hit
TGAATCTTTACTGCAATCTCTAAACATAAATTGTAAAGATTTCATGGACA26520.1165826000029893No Hit
TTCTTAATTTCTTATGCCTATCTTTACTGCAATCTCTAAACACAAATTGT26350.11583527564399579No Hit
GCGTAGGCATAGAAAATCACAACGGTATTGATTGGGGAAGTGATAAGTGT25120.11042816410539559No Hit
TGGTACTTTTATAATTTCTTATGCCTGTCTTTACTGCAGTCTCTAAACAT24100.10594421795143447No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)