FastQCFastQC Report
Fri 3 Feb 2023
EGAF00006173867

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006173867
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2274782
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTAATGAAACCAATGAAATGGCCTCTCTGATCATCACAGAAGACAGAA145560.6398854923240996No Hit
CGGTGACACTTACCACTTCCCCAATCAATACCCTTGTGATTTCCTATGCC43920.19307344615879676No Hit
TTCTATATTGCTCAAACACACATGTTGTGCAATTTTTGTAGTTAACGCAA42260.18577604359450708No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39430.17333529103008552No Hit
ATCTATATACATCCTTCTCGACTGACAGGATTAAGAGATTAAAGTAATGA32440.14260707179852838No Hit
ACAGTCATAAATTGTGACAATTTCATGGACACTTATCACTTCCCCAATCA27040.11886853333638123No Hit
CGGTCAATTATCACAGGGTCCTGAGGTGACATACATCCTCCTCAGCTGAC26790.11776952692609664No Hit
ACTGTCTACAATTTGTGCAGTTAAGACAATTATCACATGAGTCCTGAGGT24150.10616401923349138No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)