FastQCFastQC Report
Fri 3 Feb 2023
EGAF00006173870

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006173870
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2384079
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATGTTGGTGCATGAGAAGGAGGCTGTGACTCTGGACTGCAATTATGACA153970.6458259143258256No Hit
GTCTTACAATTTGTGCAGTTAATGCAATTATCATAGGGTTCTGAGGGGAC70460.295543897664465No Hit
CACTGAAGATTTCATGGACCCTTATCACTTCCCCAATCAATACCCTTGTG59440.24932059717819752No Hit
CTACTCTAACACTGTGGTGCCTAATCCAGCAGGCACAGTGGTACACCACC36710.15397979681042448No Hit
CGCTCATTTATTAGTTTCCCAAATTAATACTTTCATAATTTCTTATGCCT31160.1307003668922045No Hit
GTTGTGATTGTGAAGATTTTATGGACATTTATTAGTTCCCCAAATTAATA28500.11954301849896752No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)