FastQCFastQC Report
Fri 3 Feb 2023
EGAF00006173871

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006173871
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2384079
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTCTCACTGTAGCCTCTTTCAGTGCACAGAAACACATCACTGAGTTC147410.6183100476116773No Hit
GTAGTAAATCGTAAAGATTTCTTGGACATTTATCACTTCCCCAATCAATA70010.29365637631974445No Hit
TGACTGTACAATTTGTGCAGTTAATGCAATTATTACAGGGTCCTGAGGTG58190.24407748233175158No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40650.17050609480642212No Hit
GGAGTCATAGGAAATCACAAGGGTATTGATTGGGGAAGTGATATGTGTCC29670.12445057399524094No Hit
TATGTAATGCAATTATTACAGGGTCCTGAGATGATATACATCCTTCTCGG27630.11589381056584115No Hit
AACTTGGCAGAAAGCATGCCACTGGTAGTAGCTGTTATCTTCTTCTCCCT26200.109895687181507No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)