FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006174651

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006174651
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7061012
Sequences flagged as poor quality0
Sequence length50
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGGAACACATCTCGTAT817391.1576102688963TruSeq Adapter, Index 15 (97% over 36bp)
ATGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG554880.7858363645324495No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGGAACACATCGCGTAT223840.3170083835008353TruSeq Adapter, Index 15 (97% over 36bp)
AAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG153880.2179291013809352No Hit
ATTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG94010.13313955563310187No Hit
AGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG86290.12220627864674355No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)