FastQCFastQC Report
Sat 4 May 2024
EGAF00006176527

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006176527
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1918040620
Total Bases289.6 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGC87053320.45386588319490334TruSeq Adapter, Index 3 (100% over 50bp)
GATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTG25700290.13399241774139276No Hit

[OK]Adapter Content

Adapter graph