FastQCFastQC Report
Fri 24 Jun 2022
EGAF00006176846

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006176846
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences216719579
Sequences flagged as poor quality0
Sequence length75
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAA9754965445.01192483398096TruSeq Adapter, Index 1 (100% over 63bp)
GATCGGAAGAGCACACGTTTGAACTCCAGTCACATCACGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAA22384021.0328563807333717TruSeq Adapter, Index 1 (98% over 63bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCATGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAA21445490.9895501873414031TruSeq Adapter, Index 1 (98% over 63bp)
GATCGGAAGAGCACACGTCTGAACTTCAGTCACATCACGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAA20642290.9524884689813835TruSeq Adapter, Index 1 (98% over 63bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAAA20428640.9426301072687114TruSeq Adapter, Index 1 (100% over 62bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTTACATCACGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAA20147550.9296598901200338TruSeq Adapter, Index 1 (98% over 63bp)
GATCGGAAGAGCACACGTCTGAATTCCAGTCACATCACGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAA19731370.9104562721580407TruSeq Adapter, Index 1 (98% over 63bp)
GATCGGAAGAGCACATGTCTGAACTCCAGTCACATCACGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAA19725190.9101711110282289TruSeq Adapter, Index 1 (98% over 63bp)
GATCGGAAGAGCACACGTCTGAACTCTAGTCACATCACGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAA19646660.9065475344062015TruSeq Adapter, Index 1 (98% over 63bp)
GATTGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAA18827910.8687682989638883TruSeq Adapter, Index 1 (98% over 63bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCATATCACGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAA18709890.8633225519508785TruSeq Adapter, Index 1 (98% over 63bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAC18304930.8446366537100001TruSeq Adapter, Index 1 (100% over 63bp)
GATCGGAAGAGTACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAA17165390.7920553407867224TruSeq Adapter, Index 1 (98% over 63bp)
GATCGGAAGAGCATACGTCTGAACTCCAGTCACATCACGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAA17146530.791185091772442TruSeq Adapter, Index 1 (98% over 63bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATTACGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAA14419590.6653570511042751TruSeq Adapter, Index 1 (98% over 63bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGCTCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAA11303110.5215546307424306TruSeq Adapter, Index 1 (98% over 63bp)
GCTCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAA9486830.43774678982742027TruSeq Adapter, Index 1 (98% over 63bp)
NATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAA8525050.3933677815053342TruSeq Adapter, Index 1 (98% over 63bp)
GATCGGAAGAGAACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAA5185140.2392557250215035TruSeq Adapter, Index 1 (98% over 63bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAACA3809770.1757926080135104TruSeq Adapter, Index 1 (100% over 63bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTCTGCCGTCTTCTGCTTGAAAAAAAAAAAA2234690.10311435682513945TruSeq Adapter, Index 1 (98% over 63bp)

[OK]Adapter Content

Adapter graph