FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006184191

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006184191
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences270843765
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGGCTT9476415034.988492350931544No Hit
ATGAAGAC6843353825.266794677736076No Hit
GATTCTGG5267891019.449925310261435No Hit
CCACTACA5213058619.247475015716166No Hit
NGCGGCTT3802990.140412684043142No Hit
NTGAAGAC2732660.10089432924549693No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)