FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006184194

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006184194
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences271020271
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGGCTT9454299834.8841057722948No Hit
ATGAAGAC6850582425.277011105933106No Hit
GATTCTGG5285481519.502162995032943No Hit
CCACTACA5229313619.29491687357954No Hit
NGCGGCTT3760390.13874940004026487No Hit
NTGAAGAC2721590.10042016377439161No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)