FastQCFastQC Report
Tue 28 Jun 2022
EGAF00006184315

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006184315
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences195428421
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCTAAAGTGTGTATTTCTCATTTTCCGTGATTTTCAGTTTTCTCGCCA2225130.113859078869598No Hit
CTGTAGGACGTGGAATATGGCAAGAAAACTGAAAATCATGGAAAATGAGA2202810.11271697272731893No Hit
CTTTAGGACGTGAAATATGGCGAGGAAAACTGAAAAAGGTGGAAAATTTA2000950.10238787120937748No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)