FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006184342

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006184342
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4556454
Sequences flagged as poor quality0
Sequence length150
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCTGCTTCATAGTCACCTAACTGGTCTGTTCCAGACAGGGTCTTATAC84170.1847269828686957No Hit
ATATGGATCAAGCTGCTTCATAGTCACCTAACTGGTCTGTTCCAGACAGG63670.1397358559967905No Hit
AGTGTATATGGATCAAGCTGCTTCATAGTCACCTAACTGGTCTGTTCCAG51800.11368489619339951No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49470.10857127055381224No Hit
ATGGATCAAGCTGCTTCATAGTCACCTAACTGGTCTGTTCCAGACAGGGT47820.10495003351290279No Hit
AAACTCCTCATTCTGCAGCCTTTACTTGCCGAGAGCTGGAATTACCAGTG47270.10374295449926631No Hit
TGGATCAAGCTGCTTCATAGTCACCTAACTGGTCTGTTCCAGACAGGGTC46360.10174578740397686No Hit
GTATATGGATCAAGCTGCTTCATAGTCACCTAACTGGTCTGTTCCAGACA45910.10075817730191064No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)