FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006184352

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006184352
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3591519
Sequences flagged as poor quality0
Sequence length150
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGAGGGAGGGGCCCATCGCGTAAGCGATGGGAGGGTGAGGGGGCGACCG67630.18830472566064665No Hit
AAGCTGCCAAGCTACGCTAGAGGGAGGGGCCCATCGCGTAAGCGATGGGA64780.18036936460589517No Hit
AGAGGGAGGGGCCCATCGCGTAAGCGATGGGAGGGTGAGGGGGCGACCGC60760.16917632901287727No Hit
GTAAGCGATGGGAGGGTGAGGGGGCGACCGCGTAGCGGTCGCGGGGGGGG59520.16572375086975735No Hit
TAGGCAGCAAGCTGCCAAGCTACGCTAGAGGGAGGGGCCCATCGCGTAAG57300.15954252225868776No Hit
AGGGAGGGGCCCATCGCGTAAGCGATGGGAGGGTGAGGGGGCGACCGCGT53900.15007577573722986No Hit
AGCAAGCTGCCAAGCTACGCTAGAGGGAGGGGCCCATCGCGTAAGCGATG53790.14976949864388855No Hit
AAGCTACGCTAGAGGGAGGGGCCCATCGCGTAAGCGATGGGAGGGTGAGG51180.1425023785200635No Hit
CTAGAGGGAGGGGCCCATCGCGTAAGCGATGGGAGGGTGAGGGGGCGACC47740.13292425851011785No Hit
CATCGCGTAAGCGATGGGAGGGTGAGGGGGCGACCGCGTAGCGGTCGCGG47530.13233954769555722No Hit
CCATCGCGTAAGCGATGGGAGGGTGAGGGGGCGACCGCGTAGCGGTCGCG46750.1301677646700463No Hit
ATCGCGTAAGCGATGGGAGGGTGAGGGGGCGACCGCGTAGCGGTCGCGGG46040.1281908852493889No Hit
CTTACGCGATGGGCCCCTCCCTCTAGCGTAGCTTGGCAGCTTGCTGCCTA44410.12365241559351349No Hit
AGCTTGCTGCCTAGCGGAGCTTGGATGAGGGGAGCGGCGCGCAAGCGCCG43840.1220653433825632No Hit
CTCTAGCGTAGCTTGGCAGCTTGCTGCCTAGCGGAGCTTGGATGAGGGGA43330.1206453314043445No Hit
AGGCAGCAAGCTGCCAAGCTACGCTAGAGGGAGGGGCCCATCGCGTAAGC43060.11989356035705227No Hit
CCCTCCCTCTAGCGTAGCTTGGCAGCTTGCTGCCTAGCGGAGCTTGGATG42390.11802805442488262No Hit
AGGGGCCCATCGCGTAAGCGATGGGAGGGTGAGGGGGCGACCGCGTAGCG42090.11719275326122457No Hit
GTAGCTTGGCAGCTTGCTGCCTAGCGGAGCTTGGATGAGGGGAGCGGCGC40830.11368448837386076No Hit
CCTCCCTCTAGCGTAGCTTGGCAGCTTGCTGCCTAGCGGAGCTTGGATGA40490.11273781372171496No Hit
GCTTACGCGATGGGCCCCTCCCTCTAGCGTAGCTTGGCAGCTTGCTGCCT40050.11151270534834982No Hit
ATCGCTTACGCGATGGGCCCCTCCCTCTAGCGTAGCTTGGCAGCTTGCTG39810.11084446441742338No Hit
AGCGTAGCTTGGCAGCTTGCTGCCTAGCGGAGCTTGGATGAGGGGAGCGG39480.10992563313739952No Hit
CGTAGCTTGGCAGCTTGCTGCCTAGCGGAGCTTGGATGAGGGGAGCGGCG39470.10989778976527757No Hit
CTAGCGTAGCTTGGCAGCTTGCTGCCTAGCGGAGCTTGGATGAGGGGAGC39230.10922954883435115No Hit
CGATGGGCCCCTCCCTCTAGCGTAGCTTGGCAGCTTGCTGCCTAGCGGAG39150.10900680185737567No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38760.10792091034462019No Hit
CGATGGGAGGGTGAGGGGGCGACCGCGTAGCGGTCGCGGGGGGGGGGGGG38140.10619462127306023No Hit
CTACGCTAGAGGGAGGGGCCCATCGCGTAAGCGATGGGAGGGTGAGGGGG37740.10508088638818283No Hit
CCTCTAGCGTAGCTTGGCAGCTTGCTGCCTAGCGGAGCTTGGATGAGGGG37680.10491382615545122No Hit
AAGCGATGGGAGGGTGAGGGGGCGACCGCGTAGCGGTCGCGGGGGGGGGG37440.10424558522452478No Hit
CAGCAAGCTGCCAAGCTACGCTAGAGGGAGGGGCCCATCGCGTAAGCGAT37400.10413421173603704No Hit
AGCTTGGCAGCTTGCTGCCTAGCGGAGCTTGGATGAGGGGAGCGGCGCGC37210.10360518766572026No Hit
CATCGCTTACGCGATGGGCCCCTCCCTCTAGCGTAGCTTGGCAGCTTGCT36510.10165615161718482No Hit
TCCCTCTAGCGTAGCTTGGCAGCTTGCTGCCTAGCGGAGCTTGGATGAGG36130.10059810347655129No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)