FastQCFastQC Report
Fri 3 May 2024
EGAF00006196749

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006196749
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12216136
Total Bases1.8 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGTCGTGAAGTGTAGATCT168250.1377276742826046Illumina Single End Sequencing Primer (100% over 32bp)
CCAATTCCCACTCCTTTCAAGACCTAGCTAGCGAATTCAAAAAAGCACCG143340.11733661118376547No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)