FastQCFastQC Report
Mon 6 May 2024
EGAF00006199694

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006199694
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14194228
Total Bases2.1 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGTCATCTATCTCGTAT338920.23877311256378297TruSeq Adapter, Index 9 (97% over 38bp)
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG184210.12977810417023034No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)