FastQCFastQC Report
Fri 3 May 2024
EGAF00006199695

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006199695
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14194228
Total Bases2.1 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGTGGACTGTGTAGATCT304060.21421383396124116Illumina Single End PCR Primer 1 (97% over 34bp)
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG201090.14167026202481742No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)