FastQCFastQC Report
Tue 28 Jun 2022
EGAF00006205274

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205274
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3182077
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCTATATAAATGCGTAGGGGTTTTAG75240.2364493379638519No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA71500.2246960082989821No Hit
CCACCTACTAAGAACGGCCATGCACCAC61100.19201295254640285No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC56400.1772427254274488No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA55440.17422582797336458No Hit
CGTTGGGTTGACAGTGAGGGTAATAATG49870.15672153753664667No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTT43050.1352889952065899No Hit
GGTGAAGTCTTAGCATGTACTGCTCGGA37680.11841322507280623No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA37570.11806753890619241No Hit
CAGATCACGTAGGACTTTAATCGTTGAA37190.1168733503306174No Hit
GCCTCTATATAAATGCGTAGGGGTTTTA36310.11410786099770684No Hit
CGTTCGTTATCGGAATTAACCAGACAAA36070.11335363663418578No Hit
ACGCCGAGTTCCTTTTACTTTTTTTAAC35710.1122223000889042No Hit
CATGCCTGTGTTGGGTTGACAGTGAGGG34970.1098967749680476No Hit
AGTTGGTTGATTGTAGATATTGGGCTGT34770.10926825466511339No Hit
CGTTCTGATTAATGAAAACATTCTTGGC33920.10659704337764297No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT33750.10606280112014889No Hit
AGGGTGATAGATTGGTCCAATTGGGTGT32890.10336016381753176No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)