FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205277

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205277
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3114980
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCTATATAAATGCGTAGGGGTTTTAG71460.2294075724402725No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA69110.22186338275045103No Hit
CCACCTACTAAGAACGGCCATGCACCAC59090.18969624203044644No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC55070.1767908622206242No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA53940.17316323058253985No Hit
CGTTGGGTTGACAGTGAGGGTAATAATG46500.14927864705391367No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTT41620.13361241484696532No Hit
GGTGAAGTCTTAGCATGTACTGCTCGGA36510.11720781513845996No Hit
CAGATCACGTAGGACTTTAATCGTTGAA36450.11701519752935813No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA36180.11614841828839993No Hit
CGTTCGTTATCGGAATTAACCAGACAAA35280.11325915415187256No Hit
GCCTCTATATAAATGCGTAGGGGTTTTA35030.11245658078061496No Hit
ACGCCGAGTTCCTTTTACTTTTTTTAAC34750.11155769860480644No Hit
CGTTCTGATTAATGAAAACATTCTTGGC33810.10854002272887787No Hit
AGTTGGTTGATTGTAGATATTGGGCTGT33780.10844371392432696No Hit
CATGCCTGTGTTGGGTTGACAGTGAGGG33450.10738431707426692No Hit
AGGGTGATAGATTGGTCCAATTGGGTGT32800.10529762630899717No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT32500.10433453826348806No Hit
TTCGGTCTTGATTAATGAAAACATTCTT31300.10048218608145157No Hit
AGTGAGGGTAATAATGACTTGTTGGTTG31230.10025746553749942No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)