FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205279

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205279
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2941913
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGGCGTC110157737.44424121311541No Hit
GGTTTACT68082923.14239068252528No Hit
CTAAACGG56707919.275858939404394No Hit
AACCGTAA51420117.478457044786843No Hit
ACCCGTAA50630.17209890299271258No Hit
TCGGCGTA42600.14480373824786796No Hit
TCGGCGGC36250.12321914346209423No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)