FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205280

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205280
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2941913
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCTATATAAATGCGTAGGGGTTTTAG68340.23229782797791776No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA64490.21921110515504705No Hit
CCACCTACTAAGAACGGCCATGCACCAC54870.18651129384179613No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC51590.17536208582646734No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA51130.17379847738529317No Hit
CGTTGGGTTGACAGTGAGGGTAATAATG43990.14952855505924206No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTT39200.13324663237831982No Hit
GGTGAAGTCTTAGCATGTACTGCTCGGA34610.11764453945442982No Hit
CAGATCACGTAGGACTTTAATCGTTGAA34250.11642084589177178No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA33540.11400745025430732No Hit
GCCTCTATATAAATGCGTAGGGGTTTTA33300.11319165454586862No Hit
CGTTCGTTATCGGAATTAACCAGACAAA32690.11111817378692028No Hit
ACGCCGAGTTCCTTTTACTTTTTTTAAC32180.10938460790648806No Hit
CGTTCTGATTAATGAAAACATTCTTGGC32050.1089427185644171No Hit
CATGCCTGTGTTGGGTTGACAGTGAGGG30920.10510168043718492No Hit
AGTTGGTTGATTGTAGATATTGGGCTGT30730.10445584216800428No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT30490.10364004645956561No Hit
AGGGTGATAGATTGGTCCAATTGGGTGT29960.10183849760343015No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)