FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205282

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205282
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3170453
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGGCGTC118722837.44663617470437No Hit
GGTTTACT73399023.150950353151426No Hit
CTAAACGG61268819.324935584914837No Hit
AACCGTAA55312817.44633968710465No Hit
ACCCGTAA65180.20558576329628603No Hit
TCGGCGTA49260.15537211874769946No Hit
TCGGCGGC44950.14177784688812609No Hit
CTAACCGG38330.12089754997156557No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)