FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205283

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205283
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3170453
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCTATATAAATGCGTAGGGGTTTTAG73640.2322696472712259No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA71300.2248889985122No Hit
CCACCTACTAAGAACGGCCATGCACCAC57100.18010044621383758No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC55810.17603162702616942No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA53160.16767320001274266No Hit
CGTTGGGTTGACAGTGAGGGTAATAATG47620.15019935636957873No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTT42380.13367174974680274No Hit
GGTGAAGTCTTAGCATGTACTGCTCGGA37140.11714414312402675No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA37040.11682873078389744No Hit
CAGATCACGTAGGACTTTAATCGTTGAA36630.11553554018936726No Hit
AGTTGGTTGATTGTAGATATTGGGCTGT35330.1114351797676862No Hit
GCCTCTATATAAATGCGTAGGGGTTTTA34900.11007890670513015No Hit
ACGCCGAGTTCCTTTTACTTTTTTTAAC34680.10938499955684566No Hit
CGTTCGTTATCGGAATTAACCAGACAAA33800.1066093709637077No Hit
CATGCCTGTGTTGGGTTGACAGTGAGGG33630.10607316998548788No Hit
CGTTCTGATTAATGAAAACATTCTTGGC33420.10541080407121632No Hit
AGGGTGATAGATTGGTCCAATTGGGTGT32500.10250901054202664No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT31980.10086886637335421No Hit
AGTGAGGGTAATAATGACTTGTTGGTTG31810.1003326653951344No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)