FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205285

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205285
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43214527
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGGCGTC1699335639.32324886952945No Hit
GGTTTACT943156421.824984917687516No Hit
CTAAACGG825091119.092910585368667No Hit
AACCGTAA815385418.868317128635933No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)