FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205286

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205286
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43214527
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCTATATAAATGCGTAGGGGTTTTAG982980.2274651762357598No Hit
CCACCTACTAAGAACGGCCATGCACCAC965740.2234757770228516No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA885490.20490563277483057No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA880860.20383423379827806No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC818600.1894270415131467No Hit
CGTTGGGTTGACAGTGAGGGTAATAATG597270.13821046797527137No Hit
CGTTCGTTATCGGAATTAACCAGACAAA531810.12306278395688561No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTT528190.12222510268364153No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA523370.12110973701042707No Hit
GCCTCTATATAAATGCGTAGGGGTTTTA486370.11254780134467282No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT483770.1119461518114036No Hit
GGTGAAGTCTTAGCATGTACTGCTCGGA480100.11109690035482744No Hit
TACGGGCGGTGTGTACAAAGGGCAGGGA474190.10972930468497319No Hit
CGTTCTGATTAATGAAAACATTCTTGGC471730.10916005166503384No Hit
CAGATCACGTAGGACTTTAATCGTTGAA463810.10732733462522914No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)