FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205289

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205289
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42346371
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCTATATAAATGCGTAGGGGTTTTAG959370.22655306165432687No Hit
CCACCTACTAAGAACGGCCATGCACCAC936640.2211854234215253No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA866630.20465271982810523No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA864950.20425599161732183No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC800740.1890929449420825No Hit
CGTTGGGTTGACAGTGAGGGTAATAATG589760.13927049380453405No Hit
CGTTCGTTATCGGAATTAACCAGACAAA525100.12400118064426348No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTT516900.12206476913924925No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA512310.12098085099193033No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT475170.11221032376068306No Hit
GGTGAAGTCTTAGCATGTACTGCTCGGA474220.11198598340339481No Hit
GCCTCTATATAAATGCGTAGGGGTTTTA468700.11068244785367794No Hit
TACGGGCGGTGTGTACAAAGGGCAGGGA465690.10997164314269102No Hit
CGTTCTGATTAATGAAAACATTCTTGGC458560.10828790972430673No Hit
CAGATCACGTAGGACTTTAATCGTTGAA451030.10650971720811685No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)