FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205291

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205291
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18051308
Sequences flagged as poor quality0
Sequence length8
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACGCCT587079132.52280111779158No Hit
TGTGCGGG533500029.55464501519779No Hit
ACCATAAC426215923.61135824617252No Hit
GTGTATTA230185612.751740760281749No Hit
TGTGCGGA382820.21207327469012216No Hit
GGGTATTA291480.16147306333701691No Hit
ACCATAAA184720.10233053471803816No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)