FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205294

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205294
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17684951
Sequences flagged as poor quality0
Sequence length8
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACGCCT575517232.54276474953196No Hit
TGTGCGGG522094229.52194778487088No Hit
ACCATAAC417067523.583186631390724No Hit
GTGTATTA224688512.705067715483068No Hit
TGTGCGGA380930.21539782609519245No Hit
GGGTATTA310610.17563520532231047No Hit
ACCATAAA190040.10745859572921634No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)