FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205297

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205297
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2628132
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACGCCT78429229.842184486928357No Hit
TGTGCGGG76693729.181829527588416No Hit
ACCATAAC63952724.333899514940647No Hit
GTGTATTA37746814.36259670366633No Hit
TGTGCGGA54790.20847506898435847No Hit
CACCGCCT43260.16460360438516786No Hit
CAACGCCA30820.11726960441865172No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)