FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205300

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205300
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2556425
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACGCCT75305929.457504131746482No Hit
TGTGCGGG74481729.13510077549703No Hit
ACCATAAC61703724.13671435696334No Hit
GTGTATTA36515314.283736076747802No Hit
TGTGCGGA53760.2102936718268676No Hit
CACCGCCT53080.20763370722786706No Hit
CAACGCCA32950.12889093167215937No Hit
ACAATAAC30990.12122397488680482No Hit
TGGGCGGG26960.10545977292508092No Hit
CCCATAAC26050.10190011441759488No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)