FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205303

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205303
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2401590
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACGCCT70517729.362922064132512No Hit
TGTGCGGG69193528.811537356501315No Hit
ACCATAAC57379623.89233799274647No Hit
GTGTATTA34178714.231696501068042No Hit
CACCGCCT63910.26611536523719703No Hit
TGTGCGGA50400.2098609671092901No Hit
ACAATAAC44210.184086376109161No Hit
CCCATAAC34980.14565350455323348No Hit
CAACGCCA32920.137075853913449No Hit
ACCATAAA32790.13653454586336553No Hit
AAACGCCT27470.11438255489071823No Hit
TGGGCGGG25290.10530523528162591No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)