FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205309

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205309
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66276965
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGCAGC2750444941.499258452767116No Hit
CATCACTT1712798625.843045166597474No Hit
ACAATTCA1310084219.76681038427152No Hit
GTGTGGAG664723910.0294861118037No Hit
GTGGGGAG8958811.3517230307694386No Hit
CATCACTA1468140.22151587659453026No Hit
GGGTGGAG1464090.22090480455766193No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)