FastQCFastQC Report
Tue 28 Jun 2022
EGAF00006205312

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205312
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65950016
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGCAGC2736515441.4937791675441No Hit
CATCACTT1707205425.886353082916614No Hit
ACAATTCA1302797219.75431211419266No Hit
GTGTGGAG65770339.972754214343178No Hit
GTGGGGAG9033511.3697509944500998No Hit
GGGTGGAG1485430.22523573004136951No Hit
CATCACTA1468970.2227399004725033No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)