FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205315

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205315
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2380141
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGCAGC93340539.21637415598488No Hit
CATCACTT57763924.269108426769677No Hit
ACAATTCA51907421.80853991423197No Hit
GTGTGGAG30196012.686643354322285No Hit
CATCACTA55260.23217111927402617No Hit
TGCGCCGC28750.1207911632125996No Hit
ACAATTAA27150.11406887239033317No Hit
TGCGCAGA26510.11137995606142662No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)