FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205318

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205318
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2309871
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGCAGC89809438.88069939836467No Hit
CATCACTT55681424.105848335253356No Hit
ACAATTCA50318421.784073656061313No Hit
GTGTGGAG29161412.624687699010032No Hit
CATCACTA53980.23369270405143838No Hit
TGCGCCGC49820.21568304030831156No Hit
ACAATTAA30640.1326481002618761No Hit
TGCGCAGA28690.12420607038228541No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)