FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205321

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205321
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2182293
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGCAGC84492938.71748660697716No Hit
CATCACTT52350823.98889608315657No Hit
ACAATTCA47222721.639028306464805No Hit
GTGTGGAG27290212.50528687027819No Hit
CATCACTA49720.22783375101326905No Hit
TGCGCCGC48270.22118936366473246No Hit
TGCGCAGA37330.17105860670404938No Hit
ACAATTAA36530.16739273782209815No Hit
CATCCCTT26940.12344813459970773No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)