FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205324

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205324
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2340592
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGCAGC89965538.437070621449614No Hit
CATCACTT56072423.956503311982612No Hit
ACAATTCA50821221.71296834305167No Hit
GTGTGGAG29528512.615825398018963No Hit
TGCGCCGC66960.28608146998708023No Hit
CATCACTA57070.24382720269060135No Hit
TGCGCAGA42600.182005236282103No Hit
ACAATTAA42200.18029626692734146No Hit
CATCCCTT42180.18021081845960338No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)