FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205339

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205339
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23802333
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGGTGC746061431.344045140449044No Hit
GCGATGTG650507727.3295773149632No Hit
TTTCCACT532667122.378776903927864No Hit
AGATACAA399561116.786635999084627No Hit
AAATACAA319360.1341717217383691No Hit
GCGAGGTG299220.1257103662905649No Hit
TTTCCACA277650.11664822939835351No Hit
GCGATGTA276220.11604744795394636No Hit
AGATAAAA238040.10000700351515963RNA PCR Primer, Index 35 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)