FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205342

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205342
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24570335
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGGTGC771708831.408151333711977No Hit
GCGATGTG673149627.39684257459249No Hit
TTTCCACT548505322.323883658891912No Hit
AGATACAA412571916.79146417824584No Hit
AAATACAA309290.1258794395762207No Hit
GCGATGTA285670.11626622103443035No Hit
TTTCCACA281120.11441439443133357No Hit
GCGAGGTG280520.11417019751663948No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)