FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205345

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205345
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21824335
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGGCTT641059129.3735914519274No Hit
GATTCTGG563897625.838019806789074No Hit
ATGAAGAC511970823.45871248768863No Hit
CCACTACA396511418.168315323238943No Hit
ATGAAGCC849870.3894139271597508No Hit
CCCCTACA440070.20164188278818115No Hit
GATTCTGA416080.19064956618380355RNA PCR Primer, Index 40 (100% over 8bp)
TGCGGCTA357270.16370258246127545No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)