FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205348

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205348
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21456360
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGGCTT625804329.166377708054863No Hit
GATTCTGG554778325.856123778683802No Hit
ATGAAGAC501192423.358687121207886No Hit
CCACTACA390370718.193705735735232No Hit
ATGAAGCC958020.446496982712818No Hit
CCCCTACA486050.22652956978723324No Hit
GATTCTGA407780.19005087535816886RNA PCR Primer, Index 40 (100% over 8bp)
TGCGGCTA358340.16700875637806226No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)