FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205357

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205357
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26199741
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGGCTT922381635.20575260648569No Hit
ATGAAGAC603184623.022540566336133No Hit
GATTCTGG592986422.633292443616142No Hit
CCACTACA462881517.667407475516647No Hit
TGCGGCTA619540.2364679864583394No Hit
GATTCTGA430790.16442528954770966RNA PCR Primer, Index 40 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)