FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205360

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205360
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26116835
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGGCTT920528635.246560312534044No Hit
ATGAAGAC601671023.037668997793954No Hit
GATTCTGG589349322.565877526890223No Hit
CCACTACA461333717.664226924893462No Hit
TGCGGCTA622900.23850516343193962No Hit
GATTCTGA430480.16482854832907584RNA PCR Primer, Index 40 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)