FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205363

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205363
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19451747
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCGATG589038330.282025568191894No Hit
AACGTCAA490162125.198872882728736No Hit
GCATCTCC459556823.62547693016982No Hit
TGTAAGGT360011518.50792630605364No Hit
CTGCGATA711460.3657563508305963No Hit
GCCTCTCC404050.20771913185998153No Hit
AGCGTCAA366170.18824530259415773No Hit
GCATCTCA289590.14887608809635453No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)