FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205366

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205366
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18325698
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCGATG553400930.198080313230086No Hit
AACGTCAA459754725.087977549340824No Hit
GCATCTCC429421823.432766380849447No Hit
TGTAAGGT336937418.386060929302666No Hit
CTGCGATA680280.3712164196965376No Hit
GCCTCTCC451880.24658269496747137No Hit
AGCGTCAA352650.1924346892544011No Hit
GCATCTCA276830.15106109464425313No Hit
AAAGTCAA205640.11221400680072321No Hit
AACGTAAA196130.10702457281572576No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)