FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205369

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205369
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17520465
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCGATG530551030.281787612372163No Hit
AACGTCAA439661425.0941627405437No Hit
GCATCTCC409250523.358426845406218No Hit
TGTAAGGT322639418.415002113243No Hit
CTGCGATA656480.3746932515775124No Hit
GCCTCTCC496770.283536995165368No Hit
AGCGTCAA324940.18546311413538397No Hit
GCATCTCA267110.15245599931280363No Hit
AAAGTCAA219540.12530489344888962No Hit
GGTAAGGT213090.12162348430820757No Hit
AACGTAAA202680.11568186118347885No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)