FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205372

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205372
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18089055
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCGATG547360930.25923134182521No Hit
AACGTCAA454330125.11629822563976No Hit
GCATCTCC424259723.453944940739028No Hit
TGTAAGGT333654818.445120543886897No Hit
CTGCGATA674970.3731372368539982No Hit
GCCTCTCC446580.24687856828341778No Hit
AGCGTCAA352970.19512904350171967No Hit
GCATCTCA273950.15144516946849906No Hit
AAAGTCAA207700.11482081291698212No Hit
AACGTAAA199090.11006102861647554No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)